rs9990079 chr3:113838843 G>A
- Sequence
gcctgtaactcgcagcgcgcgctg[G/A]aggtgggcgcggggcggtgcggtg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) foreskin keratinocyte A549 (lung carcinoma)
- ASB for transcription factors
- CTCF_HUMAN STAT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.55 | 0.61 | 1.33 | -2.83 | Concordant | |||
| STAT1_HUMAN | 1.49 | -0.60 | 1.75 | n/a | No Hit |
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Motif analysis
