rs10036528 chr5:110716700 G>A
- Sequence
ttgctgtggttactaacaggccac[G/A]gcattagtctgtggccagggttat
- ASB in cell types
- GM12878 (female B-cells)
- ASB for transcription factors
- RUNX3_HUMAN MEF2B_HUMAN IKZF1_HUMAN IKZF2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RUNX3_HUMAN | n/a | 2.88 | 1.33 | 3.46 | Concordant | |||
| MEF2B_HUMAN | n/a | 2.62 | 1.33 | n/a | No Hit | |||
| IKZF1_HUMAN | -1.97 | 2.05 | 1.33 | n/a | No Hit | |||
| IKZF2_HUMAN | -2.09 | 2.32 | 1.33 | n/a | n/a | |||
| ZNF24_HUMAN | -2.00 | 2.16 | 1.33 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Nerve_Tibial, Ovary, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid