rs10042497 chr5:80229390 T>A
- Sequence
atttaacatctcagaatcctcttt[T/A]cagagactgcaaaaaacaaaatag
- ASB in cell types
- LNCaP (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 0.16 | 0.92 | 1.53 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, college completion, hdl cholesterol change with statins, rheumatoid arthritis, triglycerides, years of education
GTEx eQTL Adipose_Subcutaneous, Brain_Frontal_Cortex_BA9, Colon_Transverse, Heart_Atrial_Appendage, Nerve_Tibial, Pancreas, Pituitary, Stomach, Thyroid