rs10065666 chr5:14870582 G>C
- Sequence
ggccttagaacgcagctgcatccc[G/C]ctggtggccctgccaaaacggtcc
- ASB in cell types
- spleen neural cell GM12878 (female B-cells) SUM159PT (pleiomorphic breast carcinoma)
- ASB for transcription factors
- CTCF_HUMAN SMC3_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.00 | 1.79 | 1.60 | 5.50 | Concordant | |||
| SMC3_HUMAN | -1.83 | 1.74 | 1.00 | n/a | n/a | |||
| RAD21_HUMAN | -0.92 | 1.33 | 1.17 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Whole_Blood