rs10072191 chr5:102670430 C>G
- Sequence
tttcctgccctctactggccatga[C/G]ggtcatcacagtgccctcctcatt
- ASB in cell types
- K562 (myelogenous leukemia) 22RV1 (prostate carcinoma) erythroid progenitors HepG2 (hepatoblastoma)
- ASB for transcription factors
- CTCF_HUMAN ARI1B_HUMAN RING2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.75 | 0.99 | 1.38 | n/a | No Hit | |||
| ARI1B_HUMAN | 2.40 | -2.23 | 2.00 | n/a | n/a | |||
| RING2_HUMAN | 2.67 | n/a | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP hdl cholesterol, rheumatoid arthritis, total cholesterol change with statins, years of education
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood