rs10073692 chr5:100479398 A>C
- Sequence
tgatggtttatcatgcagaactcc[A/C]agtagttaatttaaggacatgcaa
- ASB in cell types
- keratinocytes 22RV1 (prostate carcinoma)
- ASB for transcription factors
- SNAI2_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SNAI2_HUMAN | -3.00 | 2.26 | 1.50 | n/a | No Hit | |||
| CTCF_HUMAN | 0.98 | 0.43 | 1.38 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, homa-b, hypertension, combined control dataset, ldl cholesterol change with statins, paternal transmission distortion, refractive error, total cholesterol change with statins, urinary albumin-to-creatinine ratio
GTEx eQTL Artery_Tibial, Brain_Cerebellar_Hemisphere, Esophagus_Mucosa, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Whole_Blood