rs10108430 chr8:94949566 C>T
- Sequence
gaaacaagcccgggcaacaaaaac[C/T]gggagctgagcgtgaaggcctggg
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) GM12878 (female B-cells) cranial neural crest cells
- ASB for transcription factors
- RFX5_HUMAN AP2A_HUMAN MNT_HUMAN SMCA5_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RFX5_HUMAN | n/a | 2.26 | 2.00 | n/a | No Hit | |||
| AP2A_HUMAN | 1.67 | n/a | 2.00 | n/a | No Hit | |||
| MNT_HUMAN | -1.05 | 1.76 | 1.88 | n/a | n/a | |||
| SMCA5_HUMAN | -0.16 | 2.13 | 1.61 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Hypothalamus, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Whole_Blood