rs10157942 chr1:16896254 C>G
- Sequence
gttaatcctacagtggagggctgg[C/G]gaataggaagtaacatgtcgcctg
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells) HepG2 (hepatoblastoma) HT29 (colon adenocarcinoma)
- ASB for transcription factors
- ELF4_HUMAN SRF_HUMAN T2FA_HUMAN PRD10_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ELF4_HUMAN | 1.53 | n/a | 2.50 | n/a | n/a | |||
| SRF_HUMAN | 2.74 | -3.05 | 1.33 | n/a | No Hit | |||
| T2FA_HUMAN | 3.15 | n/a | 2.00 | n/a | n/a | |||
| PRD10_HUMAN | 2.97 | n/a | 2.00 | n/a | n/a | |||
| ZNF24_HUMAN | 2.05 | -1.57 | 2.12 | n/a | n/a |
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Motif analysis
