rs10175222 chr2:50536507 G>T
- Sequence
atttctattttcatttttgccata[G/T]gtagtagcggaatattgccacagg
- ASB in cell types
- A549 (lung carcinoma) pancreas adrenal gland heart left ventricle
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN SMC3_HUMAN PKNX1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.09 | 2.03 | 1.44 | n/a | No Hit | |||
| RAD21_HUMAN | -0.60 | 1.31 | 1.28 | n/a | n/a | |||
| SMC3_HUMAN | -0.48 | 1.16 | 1.23 | n/a | n/a | |||
| PKNX1_HUMAN | n/a | 2.44 | 2.00 | n/a | No Hit |
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