rs1018242 chr17:59728159 G>C
- Sequence
ttttttttctagtgatttttatag[G/C]ctttcacttgttttcctttatgag
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) K562 (myelogenous leukemia)
- ASB for transcription factors
- PRDM1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PRDM1_HUMAN | 2.18 | n/a | 2.00 | 0.26 | Weak Discordant |
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Motif analysis
Genetic associations
GRASP college completion, cystatin c in serum, fasting insulin, homa-b, homa-ir, ldl cholesterol, total cholesterol
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Cerebellum, Brain_Cortex, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Muscle_Skeletal, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Testis, Thyroid, Whole_Blood