rs10267797 chr7:107874855 C>T
- Sequence
tgtcacatattacaggttcataac[C/T]gaaaaaatgaagctggtcatttgt
- ASB in cell types
- K562 (myelogenous leukemia) A549 (lung carcinoma) foreskin keratinocyte CD34+ hematopoietic stem cells-derived proerythroblasts
- ASB for transcription factors
- RAD21_HUMAN GATA1_HUMAN TAL1_HUMAN SMC3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 1.06 | -0.05 | 1.80 | n/a | n/a | |||
| GATA1_HUMAN | 0.38 | 1.51 | 1.64 | n/a | No Hit | |||
| TAL1_HUMAN | 1.80 | -1.59 | 1.50 | n/a | No Hit | |||
| SMC3_HUMAN | 1.01 | -0.33 | 1.91 | n/a | n/a | |||
| CTCF_HUMAN | 0.73 | 0.53 | 1.62 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP bipolar disorder, conscientiousness, coronary artery disease (cad), maternal transmission distortion, total cholesterol, triglycerides
GTEx eQTL Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Transverse, Liver, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Testis, Thyroid, Whole_Blood