rs1040550 chr20:16765342 G>C
- Sequence
agctacgaaaaccttgtagtacag[G/C]cttttgggtgcattttattaaaag
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) breast tumor tissue
- ASB for transcription factors
- FOXA1_HUMAN FOS_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.08 | -0.55 | 1.42 | n/a | No Hit | |||
| FOS_HUMAN | 2.12 | -2.49 | 1.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration (geographic atrophy), parkinsons disease, urinary albumin-to-creatinine ratio