rs10406253 chr19:21158729 G>A
- Sequence
tttaaacagctttttgctgagact[G/A]tagggttttgaagatatagaatct
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- HTF4_HUMAN ARI1B_HUMAN TAL1_HUMAN TIF1A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HTF4_HUMAN | 2.69 | -0.81 | 2.00 | n/a | No Hit | |||
| ARI1B_HUMAN | 0.95 | n/a | 2.00 | n/a | n/a | |||
| TAL1_HUMAN | 1.02 | -3.16 | 2.25 | n/a | No Hit | |||
| TIF1A_HUMAN | 2.23 | -1.43 | 2.00 | n/a | n/a | |||
| KDM1A_HUMAN | 2.22 | -2.77 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Coronary, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood