rs10407190 chr19:21158631 T>C
- Sequence
ggattatgtttttgatttggcttt[T/C]ggcttggatgttgttgatgtaaac
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- MTG16_HUMAN ARI1B_HUMAN KDM1A_HUMAN IKZF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MTG16_HUMAN | 2.42 | n/a | 2.00 | n/a | n/a | |||
| ARI1B_HUMAN | 2.35 | n/a | 2.00 | n/a | n/a | |||
| KDM1A_HUMAN | 2.37 | n/a | 2.00 | n/a | n/a | |||
| IKZF1_HUMAN | 2.15 | -2.62 | 2.00 | n/a | No Hit | |||
| HDAC2_HUMAN | 2.06 | -1.77 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Coronary, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood