rs10416079 chr19:4471963 A>C
- Sequence
agctccaccccttcactcccttag[A/C]gcgtctgttcgtctcctcccacct
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) liver
- ASB for transcription factors
- OVOL3_HUMAN ZN335_HUMAN FOXK2_HUMAN GABPA_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| OVOL3_HUMAN | n/a | 2.66 | 2.00 | n/a | n/a | |||
| ZN335_HUMAN | n/a | 2.54 | 2.00 | n/a | No Hit | |||
| FOXK2_HUMAN | 1.89 | -2.58 | 2.00 | n/a | n/a | |||
| GABPA_HUMAN | 1.76 | -1.61 | 2.00 | n/a | No Hit | |||
| TAL1_HUMAN | 1.88 | -1.59 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Esophagus_Mucosa, Esophagus_Muscularis, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid