rs10420225 chr19:4724145 G>A
- Sequence
gttcgattcccggccaacgcatgc[G/A]gtaccacttttgcgagtttgaaat
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney)
- ASB for transcription factors
- CTCF_HUMAN HDAC1_HUMAN NRF1_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.22 | 0.91 | 1.26 | n/a | No Hit | |||
| HDAC1_HUMAN | 1.80 | -0.73 | 2.00 | n/a | n/a | |||
| NRF1_HUMAN | 1.66 | -1.00 | 2.00 | -4.81 | Concordant | |||
| RAD21_HUMAN | 0.96 | -0.61 | 1.33 | n/a | n/a |
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Motif analysis
