rs10424059 chr19:52786791 T>A
- Sequence
tccgggtttgtgcgcgcccaggac[T/A]gaagccaggccggggcaggttggc
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) mammary epithelial cells HEK293 (embryonic kidney)
- ASB for transcription factors
- ZBT26_HUMAN HDAC1_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZBT26_HUMAN | 2.15 | -1.84 | 1.33 | n/a | n/a | |||
| HDAC1_HUMAN | 1.81 | -1.47 | 2.00 | n/a | n/a | |||
| CTCF_HUMAN | 0.99 | -0.23 | 1.54 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Cerebellar_Hemisphere, Breast_Mammary_Tissue, Esophagus_Muscularis, Ovary, Whole_Blood