rs10425 chr6:26056321 A>G
- Sequence
gatgagctctgacaccgggggacc[A/G]gacgccttacgaggcgtaccccca
- ASB in cell types
- HepG2 (hepatoblastoma) GM12878 (female B-cells) tibial nerve fetal bone marrow-derived mononuclear cells
- ASB for transcription factors
- FOXK2_HUMAN CTCF_HUMAN CREB1_HUMAN KMT2A_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 0.10 | 2.54 | 1.67 | n/a | n/a | |||
| CTCF_HUMAN | 0.52 | 1.20 | 1.24 | 1.13 | Weak Concordant | |||
| CREB1_HUMAN | 1.06 | -0.59 | 1.89 | n/a | No Hit | |||
| KMT2A_HUMAN | 0.16 | 1.87 | 1.42 | n/a | n/a |
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Motif analysis
Genetic associations
GRASP autism, coronary artery disease (cad), cystatin c in serum, height, ldl cholesterol, mean corpuscular hemoglobin concentration (mchc), serum urate, triglycerides change with statins, uric acid, urinary albumin-to-creatinine ratio
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood