rs10425465 chr19:33407028 T>G
- Sequence
caacactgccctcttctggccagt[T/G]ctggaaggacaggcttgctgccca
- ASB in cell types
- A549 (lung carcinoma) GM12878 (female B-cells) cranial neural crest cells HeLa Kyoto (cervical adenocarcinoma)
- ASB for transcription factors
- RAD21_HUMAN SMC3_HUMAN AP2A_HUMAN IKZF1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 1.22 | 0.72 | 1.52 | n/a | n/a | |||
| SMC3_HUMAN | 1.07 | 1.10 | 1.63 | n/a | n/a | |||
| AP2A_HUMAN | 2.38 | -3.27 | 2.00 | n/a | No Hit | |||
| IKZF1_HUMAN | -0.16 | 1.58 | 1.33 | n/a | No Hit |
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