ADASTRA v1.6.10
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rs10500751
chr11:11787891
C
>
A
Sequence
tattcatacgcaaataaggaagga[C/A]ggagttgtaaatattatgggccta
ASB in cell types
A549 (lung carcinoma)
GM12878 (female B-cells)
fibroblast of pulmonary artery
H1 (embryonic stem cells)
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(+5 others)
ASB for transcription factors
CTCF_HUMAN
RAD21_HUMAN
SMC3_HUMAN
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View in UCSC Genome Browser
View in PheLiGe
Color scale
-log10 FDR of Ref (
C
) ASB
-log10 FDR of Alt (
A
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN
0.92
0.52
2.6·10
-13
1.00
1.49
n/a
No Hit
RAD21_HUMAN
0.98
1.01
6.1·10
-6
0.65
1.68
n/a
n/a
SMC3_HUMAN
0.05
1.08
0.96
2.9·10
-3
1.92
n/a
n/a
Items per page:
5
1 – 3 of 3
Motif analysis
No data available
Genetic associations
GRASP
comorbid depressive syndrome and alcohol dependence
,
hypertension (early onset hypertension)
,
partial epilepsy
GTEx eQTL
Esophagus_Mucosa
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Generated by ADASTRA database
2020.06.22 v1.6.10 Soos
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)