rs10505770 chr12:12873120 G>A
- Sequence
tgaagaaccacagagggaagagta[G/A]acaccatacagctcacactgactc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- FOS_HUMAN CUX1_HUMAN FOXA1_HUMAN GRHL2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOS_HUMAN | n/a | 3.02 | 2.00 | n/a | n/a | |||
| CUX1_HUMAN | -2.97 | 2.68 | 1.50 | n/a | No Hit | |||
| FOXA1_HUMAN | -0.37 | 1.99 | 1.50 | 6.89 | Concordant | |||
| GRHL2_HUMAN | -1.49 | 1.26 | 2.25 | n/a | No Hit | |||
| ESR1_HUMAN | 1.04 | 1.01 | 1.95 | n/a | No Hit |
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Motif analysis
Genetic associations
GRASP 2 hour glucose, aortic valve calcium, arthritis including non-rheumatoid, hdl cholesterol, longstanding arthritis, neuroblastoma (brain cancer), refractive error, rheumatoid arthritis, tetrology of fallot