rs10508 chr16:3023239 G>T
- Sequence
gccagtggaggaacctacctgagt[G/T]ggggcagggctggggagaaggtca
- ASB in cell types
- HEK293 (embryonic kidney) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- ZN143_HUMAN ZNF76_HUMAN SP2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZN143_HUMAN | 2.07 | -1.67 | 2.00 | n/a | No Hit | |||
| ZNF76_HUMAN | n/a | 2.41 | 2.00 | n/a | No Hit | |||
| SP2_HUMAN | -1.71 | 2.07 | 2.00 | -3.37 | Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Cerebellum, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Muscle_Skeletal, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood