rs1053639 chr10:72275283 T>A
- Sequence
ggcaggagctgagggactgattcc[T/A]gtggttggaaaactgaggcagcca
- ASB in cell types
- A549 (lung carcinoma) PC9 (lung adenocarcinoma) GM12878 (female B-cells)
- ASB for transcription factors
- JUN_HUMAN FOXK2_HUMAN ARNT_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | -0.22 | 1.57 | 2.00 | n/a | No Hit | |||
| FOXK2_HUMAN | 1.69 | -1.72 | 1.33 | n/a | n/a | |||
| ARNT_HUMAN | n/a | 1.68 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid