rs10599 chr17:59397562 G>A
- Sequence
gagagcagtggcacgggggcgtga[G/A]gaagagggaaaggggaaactctaa
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma)
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| MCF7 (Invasive ductal breast carcinoma) | -0.39 | 0.73 | 2.48 |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Hypothalamus, Brain_Putamen_basal_ganglia, Esophagus_Mucosa, Pancreas, Thyroid