rs10743186 chr12:121918530 C>T
- Sequence
cgtgaccaccgccctgccctgtcg[C/T]tttagggcctgtcgcttccggcgg
- ASB in cell types
- HEK293 (embryonic kidney) 22RV1 (prostate carcinoma) gastroesophageal sphincter thoracic aorta
- ASB for transcription factors
- CTCF_HUMAN ZBT26_HUMAN USF2_HUMAN MYNN_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.88 | 0.34 | 1.88 | n/a | No Hit | |||
| ZBT26_HUMAN | 2.92 | n/a | 2.00 | n/a | n/a | |||
| USF2_HUMAN | 1.55 | -1.62 | 1.33 | n/a | No Hit | |||
| MYNN_HUMAN | 2.71 | n/a | 2.00 | n/a | n/a | |||
| RAD21_HUMAN | 1.84 | 0.38 | 1.33 | n/a | n/a |
Items per page:
1 – 5 of 7
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Hippocampus, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood