rs107589 chr7:108181276 C>T
- Sequence
taacaaatcaaagtagtgactgta[C/T]gcttggctgcctatcagtaaaaaa
- ASB in cell types
- K562 (myelogenous leukemia) A549 (lung carcinoma) foreskin keratinocyte
- ASB for transcription factors
- RAD21_HUMAN SMC3_HUMAN KDM1A_HUMAN HDAC1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 1.36 | -0.15 | 1.93 | n/a | n/a | |||
| SMC3_HUMAN | 1.25 | -0.03 | 2.00 | n/a | n/a | |||
| KDM1A_HUMAN | 0.64 | n/a | 1.50 | n/a | n/a | |||
| HDAC1_HUMAN | 1.21 | -1.55 | 1.44 | n/a | n/a | |||
| ATF3_HUMAN | 1.71 | -1.38 | 1.42 | n/a | No Hit |
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