rs1076188 chr17:42067415 T>G
- Sequence
gtgatttgatggtccaaaccctgc[T/G]gctagggtttggatgttgtggctg
- ASB in cell types
- A549 (lung carcinoma) HepG2 (hepatoblastoma) epidermal keratinocytes OCI-LY7 (diffuse large B-cell lymphoma)
- ASB for transcription factors
- RAD21_HUMAN SMC3_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 0.82 | -0.18 | 2.06 | n/a | n/a | |||
| SMC3_HUMAN | 0.95 | -0.04 | 2.56 | n/a | n/a | |||
| CTCF_HUMAN | 0.93 | 0.39 | 1.59 | n/a | No Hit |
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