rs10779788 chr1:5885930 G>A
- Sequence
tttgtgaaaacctctccctctccc[G/A]tcagcgccggagtctcccaggctg
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- COT1_HUMAN ZN316_HUMAN NRF1_HUMAN NR2F6_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| COT1_HUMAN | 2.77 | n/a | 1.33 | n/a | No Hit | |||
| ZN316_HUMAN | -2.16 | 2.39 | 1.33 | n/a | n/a | |||
| NRF1_HUMAN | 0.83 | -0.21 | 1.25 | -0.27 | Weak Concordant | |||
| NR2F6_HUMAN | 2.37 | -3.25 | 1.50 | n/a | n/a | |||
| ID3_HUMAN | 1.67 | -1.95 | 1.33 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Nerve_Tibial, Ovary, Spleen, Whole_Blood