rs10783498 chr12:52213626 C>T
- Sequence
gctcaggccagtgggattgtgcct[C/T]aggcaggctcctgcccttccaagc
- ASB in cell types
- K562 (myelogenous leukemia) fibroblast of dermis esophagus squamous epithelium cranial neural crest cells
- ASB for transcription factors
- AP2A_HUMAN FOXK2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| AP2A_HUMAN | 2.08 | -2.85 | 2.00 | -4.45 | Concordant | |||
| FOXK2_HUMAN | 1.49 | n/a | 1.33 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Breast_Mammary_Tissue, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Small_Intestine_Terminal_Ileum, Testis