rs10789501 chr1:47143817 T>C
- Sequence
gacctgaacagcctggttttttgc[T/C]gtatgaggaatgcctttcatgaga
- ASB in cell types
- 22RV1 (prostate carcinoma) bipolar neuron IPSC-derived bipolar neuron pancreas
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.41 | 0.82 | 1.58 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP aortic valve calcium, bipolar disorder, diastolic blood pressure (dbp), hdl cholesterol, mitral annular calcium, paternal transmission distortion, systolic blood pressure (sbp), transmission distortion
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_EBV-transformed_lymphocytes, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid