rs10793625 chr10:45727276 C>G
- Sequence
ttccggggctctgcggtcctcggc[C/G]tgtgctggcagcctcggagcccac
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells) H1 (embryonic stem cells) T47D (invasive ductal carcinoma)
- ASB for transcription factors
- USF1_HUMAN USF2_HUMAN ELF1_HUMAN NFE2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| USF1_HUMAN | 2.04 | -1.23 | 1.39 | n/a | No Hit | |||
| USF2_HUMAN | 1.96 | -1.43 | 1.71 | n/a | No Hit | |||
| ELF1_HUMAN | 1.95 | -1.47 | 1.44 | n/a | No Hit | |||
| NFE2_HUMAN | 2.37 | n/a | 1.50 | n/a | No Hit | |||
| HIF1A_HUMAN | 2.21 | -2.59 | 1.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Whole_Blood