rs10795226 chr10:5025729 A>G
- Sequence
gggtgaaaccagctggtcacatgc[A/G]tgtgagtggctcttgggcttctgc
- ASB in cell types
- A549 (lung carcinoma) MCF7 (Invasive ductal breast carcinoma) MDA-MB-453 (breast adenocarcinoma) SK-BR-3 (breast adenocarcinoma)
- ASB for transcription factors
- GCR_HUMAN ANDR_HUMAN FOXA1_HUMAN ESR1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 2.20 | n/a | 2.00 | n/a | No Hit | |||
| ANDR_HUMAN | 2.22 | -2.52 | 1.33 | n/a | No Hit | |||
| FOXA1_HUMAN | 2.04 | -2.29 | 1.33 | n/a | No Hit | |||
| ESR1_HUMAN | 1.63 | -0.72 | 2.00 | n/a | No Hit | |||
| PRGR_HUMAN | 1.70 | -1.48 | 1.33 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Lung, Muscle_Skeletal