rs10797406 chr1:3619116 G>C
- Sequence
caggaagataaataatgacttcat[G/C]tagggcctgaatacacacacccag
- ASB in cell types
- HEK293 (embryonic kidney) foreskin keratinocyte K562 (myelogenous leukemia) CD34+ hematopoietic stem cells-derived proerythroblasts
- ASB for transcription factors
- ZIC2_HUMAN ZFHX2_HUMAN HTF4_HUMAN MGAP_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZIC2_HUMAN | 2.75 | n/a | 2.00 | n/a | n/a | |||
| ZFHX2_HUMAN | 2.21 | -1.79 | 2.00 | n/a | n/a | |||
| HTF4_HUMAN | 1.45 | -0.95 | 1.33 | n/a | No Hit | |||
| MGAP_HUMAN | -1.81 | 1.63 | 1.33 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood