rs10840243 chr11:9461946 A>G
- Sequence
aatcagctgatataatcaagtgag[A/G]atgtggggagaaattgtaggttcg
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells)
- ASB for transcription factors
- HDAC2_HUMAN HDAC1_HUMAN KDM1A_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HDAC2_HUMAN | -1.67 | 1.90 | 2.00 | n/a | n/a | |||
| HDAC1_HUMAN | -0.70 | 1.69 | 2.00 | n/a | n/a | |||
| KDM1A_HUMAN | -2.28 | 1.90 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP body mass index (bmi), comorbid depressive syndrome and alcohol dependence, hdl cholesterol, total cholesterol
GTEx eQTL Artery_Aorta, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Cells_Cultured_fibroblasts, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg