rs10843110 chr12:28136208 T>G
- Sequence
gccatattggtcaccaggacccaa[T/G]gggaaagggctttgtcctatcagc
- ASB in cell types
- K562 (myelogenous leukemia) CD34+ bone marrow cell-derived erythroid progenitors
- ASB for transcription factors
- ARI1B_HUMAN TAL1_HUMAN NCOR1_HUMAN EHMT2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ARI1B_HUMAN | 0.91 | n/a | 2.00 | n/a | n/a | |||
| TAL1_HUMAN | 1.13 | -0.46 | 2.14 | n/a | No Hit | |||
| NCOR1_HUMAN | 2.00 | -0.29 | 2.00 | n/a | n/a | |||
| EHMT2_HUMAN | 3.14 | n/a | 2.00 | n/a | n/a | |||
| IKZF1_HUMAN | 2.19 | -1.45 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Stomach, Thyroid