rs10875287 chr1:100347352 T>C
- Sequence
tgctcatccactgccttccactcc[T/C]acccccatattgggcctgtgctaa
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- PF21A_HUMAN KDM1A_HUMAN IKZF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PF21A_HUMAN | n/a | 2.22 | 1.33 | n/a | n/a | |||
| KDM1A_HUMAN | -0.99 | 1.31 | 1.33 | n/a | n/a | |||
| IKZF1_HUMAN | -2.30 | 1.85 | 2.00 | 2.87 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Heart_Left_Ventricle, Liver, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Spleen, Thyroid, Whole_Blood