rs10896109 chr11:66312552 A>G
- Sequence
tccctggagggcggagtttacatc[A/G]tcccccaacagagttaagacctct
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- PRD10_HUMAN ATF4_HUMAN HDAC1_HUMAN MNT_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PRD10_HUMAN | 1.25 | n/a | 2.00 | n/a | n/a | |||
| ATF4_HUMAN | 2.49 | -3.75 | 2.00 | -4.22 | Concordant | |||
| HDAC1_HUMAN | 1.59 | -0.39 | 2.00 | n/a | n/a | |||
| MNT_HUMAN | 1.58 | -0.14 | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood