rs10905358 chr10:8407865 G>A
- Sequence
aataaatgctgggcaaaggctcat[G/A]taaatagagactgtgagttcctcc
- ASB in cell types
- T47D (invasive ductal carcinoma) MCF7 (Invasive ductal breast carcinoma) LHSAR (prostate epithelial cells) HUES64 (embryonic stem cells)
- ASB for transcription factors
- FOXA1_HUMAN ESR1_HUMAN ANDR_HUMAN PRGR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.94 | -0.53 | 1.55 | -1.31 | Weak Concordant | |||
| ESR1_HUMAN | 1.21 | 0.36 | 1.70 | n/a | No Hit | |||
| ANDR_HUMAN | 1.48 | -1.94 | 1.44 | n/a | No Hit | |||
| PRGR_HUMAN | 1.59 | -0.29 | 1.70 | n/a | No Hit | |||
| GCR_HUMAN | 1.47 | n/a | 1.75 | n/a | No Hit |
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Motif analysis
