rs10922725 chr1:89799594 A>T
- Sequence
agttgcacctggtggcggaatggg[A/T]atagagctggaaggagaaactgga
- ASB in cell types
- SKH1 (chronic myelogenous leukemia, BCR-ABL1 positive) K562 (myelogenous leukemia)
- ASB for transcription factors
- RUNX1_HUMAN IKZF1_HUMAN KAISO_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RUNX1_HUMAN | -0.59 | 1.44 | 1.33 | n/a | No Hit | |||
| IKZF1_HUMAN | 1.02 | -0.78 | 1.60 | n/a | No Hit | |||
| KAISO_HUMAN | -1.97 | 2.04 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP 2 hour glucose, biploar disorder (bipolar schizoaffective disorder), rheumatoid arthritis, triglycerides
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Coronary, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Putamen_basal_ganglia, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Nerve_Tibial, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Testis, Thyroid, Whole_Blood