rs10992234 chr9:92115554 A>G
- Sequence
aggtgggatgccgcagtttttcca[A/G]gaattgtttaccttgtgtcctatt
- ASB in cell types
- GM12878 (female B-cells) keratinocytes MCF7 (Invasive ductal breast carcinoma) HepG2 (hepatoblastoma)
- ASB for transcription factors
- SNAI2_HUMAN FOXK2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SNAI2_HUMAN | 2.92 | -3.73 | 1.50 | n/a | No Hit | |||
| FOXK2_HUMAN | 2.87 | 0.82 | 1.33 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP chronic kidney disease, height, hypertension (early onset hypertension), partial epilepsy, refractive error
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Whole_Blood