rs11000202 chr10:72173941 A>G
- Sequence
cgcctgaaagttctaatggtattg[A/G]ccttccacccagcagggagaagca
- ASB in cell types
- A549 (lung carcinoma)
- ASB for transcription factors
- GCR_HUMAN EP300_HUMAN JUN_HUMAN SP1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 2.16 | -1.12 | 2.14 | n/a | No Hit | |||
| EP300_HUMAN | 2.04 | 0.11 | 1.83 | n/a | n/a | |||
| JUN_HUMAN | 1.70 | -0.76 | 2.00 | n/a | No Hit | |||
| SP1_HUMAN | 2.22 | -1.89 | 2.00 | n/a | No Hit | |||
| FOXA1_HUMAN | 1.73 | n/a | 2.00 | n/a | No Hit |
Items per page:
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood