rs11057888 chr12:124898583 C>A
- Sequence
cagggacggtgtggggaacggtgg[C/A]gccacctgcgggtaccacgctccg
- ASB in cell types
- GM12878 (female B-cells) MCF7 (Invasive ductal breast carcinoma) PANC1 (pancreatic ductal adenocarcinoma) HEK293 (embryonic kidney)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN TRI22_HUMAN ZN143_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.03 | -0.44 | 1.43 | -4.41 | Concordant | |||
| RAD21_HUMAN | 1.78 | -0.50 | 1.54 | n/a | n/a | |||
| TRI22_HUMAN | 1.63 | -1.02 | 1.28 | n/a | n/a | |||
| ZN143_HUMAN | 1.51 | -1.47 | 1.17 | n/a | No Hit | |||
| ELF1_HUMAN | 1.31 | -0.42 | 1.33 | n/a | No Hit |
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Motif analysis
