rs11085079 chr19:506920 A>G
- Sequence
ggatgctcgcccgtgtggccgcca[A/G]taggggctcagcgcagctgcagcg
- ASB in cell types
- HepG2 (hepatoblastoma) GM12878 (female B-cells) pancreas Peyer's patch
- ASB for transcription factors
- CTCF_HUMAN GLIS2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.85 | 0.84 | 1.47 | 4.11 | Concordant | |||
| GLIS2_HUMAN | 2.14 | n/a | 2.50 | n/a | n/a |
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Motif analysis
