rs11090186 chr22:22810153 G>A
- Sequence
taggctcagtcttgtccaccagca[G/A]ggggcagcagagctgcagccagga
- ASB in cell types
- HUES64 (embryonic stem cells) lymphoblastoid cells keratinocytes Th1-cells
- ASB for transcription factors
- CTCF_HUMAN SNAI2_HUMAN TBX21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.26 | -1.14 | 1.63 | -8.05 | Concordant | |||
| SNAI2_HUMAN | 1.89 | -3.04 | 1.50 | n/a | No Hit | |||
| TBX21_HUMAN | 1.70 | n/a | 1.33 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Breast_Mammary_Tissue, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Heart_Atrial_Appendage, Liver, Lung, Minor_Salivary_Gland, Nerve_Tibial, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Thyroid, Whole_Blood