rs11122174 chr1:230978849 C>T
- Sequence
tgccatcttccctcaaggcgcatg[C/T]gcgacagcccttgcccggctctca
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) HEK293T (embryonic kidney) A549 (lung carcinoma)
- ASB for transcription factors
- LMBL2_HUMAN JUN_HUMAN MNT_HUMAN ZFX_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| LMBL2_HUMAN | n/a | 2.20 | 1.75 | n/a | n/a | |||
| JUN_HUMAN | -0.73 | 1.35 | 2.00 | n/a | No Hit | |||
| MNT_HUMAN | -1.94 | 2.48 | 2.62 | n/a | n/a | |||
| ZFX_HUMAN | -0.46 | 1.21 | 1.67 | n/a | No Hit | |||
| ZN143_HUMAN | -0.23 | 1.10 | 1.58 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood