rs111277130 chr5:1633955 C>T
- Sequence
aagcgcctgcggcgactggcgacc[C/T]ctcagagcgacaccgcttccgcct
- ASB in cell types
- HEK293 (embryonic kidney) HEK293T (embryonic kidney) breast tumor tissue cranial neural crest cells
- ASB for transcription factors
- ZBT11_HUMAN GLIS1_HUMAN SP2_HUMAN ZBT26_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZBT11_HUMAN | n/a | 0.63 | 3.00 | n/a | n/a | |||
| GLIS1_HUMAN | n/a | 0.93 | 2.50 | n/a | n/a | |||
| SP2_HUMAN | n/a | 1.31 | 3.00 | n/a | No Hit | |||
| ZBT26_HUMAN | n/a | 0.68 | 3.00 | n/a | n/a | |||
| GABPA_HUMAN | -0.48 | 1.53 | 1.44 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood