rs111377817 chr11:71800531 C>A
- Sequence
cccgagtcattcaccaggtggcac[C/A]actgccttcatttcagcttccggc
- ASB in cell types
- HEK293 (embryonic kidney) H1 (embryonic stem cells) GM13976 (female B-cells) fibroblast of dermis
- ASB for transcription factors
- CTCF_HUMAN ZN654_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.56 | 0.01 | 1.56 | -1.94 | Weak Concordant | |||
| ZN654_HUMAN | 1.80 | -2.05 | 1.33 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Spleen, Thyroid, Whole_Blood