rs11150039 chr16:78050965 T>C
- Sequence
gagtcataaatgtctctttacaaa[T/C]gccaacggcctaggcagatatttt
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) LNCaP (prostate carcinoma)
- ASB for transcription factors
- ESR1_HUMAN FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | -0.35 | 1.52 | 2.87 | n/a | No Hit | |||
| FOXA1_HUMAN | -0.30 | 1.72 | 2.39 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellum, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Esophagus_Gastroesophageal_Junction, Prostate, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid