rs111900671 chr1:212699232 G>A
- Sequence
ccctccgcccaggctgactagtcc[G/A]gcgttctccattcccgcggcagca
- ASB in cell types
- K562 (myelogenous leukemia) bipolar neuron
- ASB for transcription factors
- MGAP_HUMAN CTCF_HUMAN LMBL2_HUMAN MNT_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MGAP_HUMAN | 1.26 | n/a | 2.50 | n/a | n/a | |||
| CTCF_HUMAN | 1.14 | -0.70 | 1.17 | n/a | No Hit | |||
| LMBL2_HUMAN | 3.22 | n/a | 3.00 | n/a | n/a | |||
| MNT_HUMAN | 2.20 | -3.29 | 2.83 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cortex, Brain_Hippocampus, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid