rs11203380 chr1:16904867 C>T
- Sequence
agggacaggcggacgtcacttccc[C/T]cgccggctgcggcaccgggttggt
- ASB in cell types
- HEK293 (embryonic kidney) HEK293T (embryonic kidney) tibial nerve HCT-116 (colon carcinoma)
- ASB for transcription factors
- CTCF_HUMAN EP300_HUMAN SP2_HUMAN ZBT11_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.39 | 0.48 | 1.41 | -3.75 | Concordant | |||
| EP300_HUMAN | 1.14 | 0.17 | 1.49 | n/a | n/a | |||
| SP2_HUMAN | 1.14 | n/a | 2.00 | -4.52 | Concordant | |||
| ZBT11_HUMAN | 2.71 | n/a | 2.00 | n/a | n/a | |||
| PKNX1_HUMAN | 2.67 | n/a | 2.00 | n/a | No Hit |
Items per page:
1 – 5 of 24
Motif analysis
